Adun.app - Revision history

Marco: Added archive URL

2019-02-21T17:30:36Z

Added archive URL

Jvilla at 16:43, 24 July 2009

2009-07-24T16:43:59Z

Jvilla at 16:43, 24 July 2009

2009-07-24T16:43:12Z

Jvilla at 16:42, 24 July 2009

2009-07-24T16:42:32Z

Jvilla at 04:59, 24 July 2009

2009-07-24T04:59:03Z

Jvilla at 04:56, 24 July 2009

2009-07-24T04:56:37Z

Jvilla at 04:55, 24 July 2009

2009-07-24T04:55:23Z

Jvilla at 04:54, 24 July 2009

2009-07-24T04:54:41Z

Jvilla at 04:54, 24 July 2009

2009-07-24T04:54:17Z

Jvilla at 04:52, 24 July 2009

2009-07-24T04:52:15Z

@@ Line 2: / Line 2: @@
 {{Application|
 shortdescription=Adun is a multipurpose, open source molecular simulation framework. It is also an object oriented program entirely written in Objective-C that aims to incorporate most of the current implementations of molecular simulation algorithms at the micro-, meso- and macroscopic levels.|
-currentversion=[http://download.gna.org/adun/Adun-0.8.2.tar.gz 0.8.2]|
+currentversion=[http://mirrors.metapeer.com/FreeBSD-Archive/ports/distfiles/Adun-0.8.2.tar.gz 0.8.2]|
 releasedate=October 25, 2007|
 license=GPL|
@@ Line 57: / Line 57: @@
 * Alexander V. Diemand|
 relatedlinks=
-* http://diana.imim.es/Adun|
+* http://diana.imim.es/Adun
 category=[[Category:Science_Applications]]}}

@@ Line 7: / Line 7: @@
 overview=
-Objectives
+'''Objectives'''
 Adun is a new extendible molecular simulation program that also includes data management and analysis capabilities. What follows is an overview of our main aims for the 1.0 version of our software.  The current stable version is 0.81. For information on the specific features of each release see the Status section.
-Description
+'''Description'''
@@ Line 18: / Line 18: @@
-Innovative Aspects
+'''Innovative Aspects'''
@@ Line 32: / Line 32: @@
-Advantages
+'''Advantages'''
@@ Line 39: / Line 39: @@
-High Perfomance Productivity
+'''High Perfomance Productivity'''
 The plugin & scripting capabilities coupled with the rigorous structure of the Adun framework allow for rapid implementation of new protocols and features. Moreover the implementation and distribution of these features is not tied to the main Adun distribution. New plugins and scripts can be uploaded by developers anywhere to the Adun website and thus users can benefit immediately from them.
@@ Line 45: / Line 45: @@
-Data management
+'''Data management'''
 Many current simulators leave managing their inputs and output to the user. However raw simulation data and subsequent data derived from it can have complex inter-relationships (between themselves and with the output of other simulations). Keeping track and accessing all this data is a time consuming and difficult task – a burden which Adun removes from the user. However Adun goes beyond data management as it can be augmented through the use of SQL databases. Not only does this provide more advanced storage solutions it also allows browsing and manipulation of Adun data residing in remote databases. This expands the amount of data available for analysis aswell as allowing collaboration through a single interface.

@@ Line 5: / Line 5: @@
 releasedate=October 25, 2007|
 license=GPL|
-overview=|
+overview=
 Objectives
@@ Line 48: / Line 48: @@
 Many current simulators leave managing their inputs and output to the user. However raw simulation data and subsequent data derived from it can have complex inter-relationships (between themselves and with the output of other simulations). Keeping track and accessing all this data is a time consuming and difficult task – a burden which Adun removes from the user. However Adun goes beyond data management as it can be augmented through the use of SQL databases. Not only does this provide more advanced storage solutions it also allows browsing and manipulation of Adun data residing in remote databases. This expands the amount of data available for analysis aswell as allowing collaboration through a single interface.
 features=|

@@ Line 6: / Line 6: @@
 license=GPL|
 overview=|
 features=|
 maintainer=

@@ Line 17: / Line 17: @@
 '''references'''
-* Johnston, MA, Galvan, IF, and Villa-Freixa, J (2005). Framework-based design of a new all-purpose molecular simulation application: the Adun simulator. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16175583 J Comput Chem 26(15):1647-59].
+* Johnston, MA, Galvan, IF, and Villà-Freixa, J (2005). Framework-based design of a new all-purpose molecular simulation application: the Adun simulator. [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16175583 J Comput Chem 26(15):1647-59].
-* Johnston, MA and Villà-Freixa, J (2007). Enabling Data Sharing and Collaboration in Complex Systems Applications LNIB 4360:124-140.
+* Johnston, MA and Villà-Freixa, J (2007). Enabling Data Sharing and Collaboration in Complex Systems Applications [http://www.springerlink.com/content/9476700461j37732/ LNIB 4360:124-140].

@@ Line 9: / Line 9: @@
 maintainer=
 * Michael A. Johnston
-* I. F. Galván
+* Raúl Alcántara
 * Jordi Villà-Freixa
 * Alexander V. Diemand|
@@ Line 15: / Line 15: @@
 * http://diana.imim.es/Adun|
 category=[[Category:Science_Applications]]}}